KnowFormer: A Transformer-Based Breakthrough Model for Efficient Knowledge Graph Reasoning, Tackling Incompleteness and Enhancing Predictive Accuracy Across Large-Scale Datasets


Knowledge graphs (KGs) are structured representations of facts consisting of entities and relationships between them. These graphs have become fundamental in artificial intelligence, natural language processing, and recommendation systems. By organizing data in this structured way, knowledge graphs enable machines to understand and reason about the world more efficiently. This reasoning ability is crucial for predicting missing facts or inferences based on existing knowledge. KGs are employed in applications ranging from search engines to virtual assistants, where the ability to draw logical conclusions from interconnected data is vital.

One of the key challenges with knowledge graphs is that they are often incomplete. Many real-world knowledge graphs need important relationships, making it difficult for systems to infer new facts or generate accurate predictions. These information gaps hinder the overall reasoning process, and traditional methods often need help to address this issue. Path-based methods, which attempt to infer missing facts by examining the shortest paths between entities, are especially prone to incomplete or oversimplified paths. Moreover, these methods often face the problem of “information over-squashing,” where too much information is compressed into too few connections, leading to inaccurate results.

Current approaches to addressing these issues include embedding-based methods that convert the entities and relations of a knowledge graph into a low-dimensional space. These techniques, like TransE, DistMult, and RotatE, have successfully preserved the structure of knowledge graphs and enabled reasoning. However, embedding-based models have limitations. They often fail in inductive scenarios where new, unseen entities or relationships must be reasoned about, as they cannot effectively leverage the local structures within the graph. Like those proposed in DRUM and CompGCN, path-based methods focus on extracting relevant paths between entities. However, they also need help with missing or incomplete paths and the issue above of information over-squashing.

Researchers from Zhongguancun Laboratory, Beihang University, and Nanyang Technological University introduced a new KnowFormer model, which utilizes transformer architecture to improve knowledge graph reasoning. This model shifts the focus from traditional path-based and embedding-based methods to a structure-aware approach. KnowFormer leverages the transformer’s self-attention mechanism, which enables it to analyze relationships between any pair of entities within a knowledge graph. This architecture makes it highly effective at addressing the limitations of path-based models, allowing the model to perform reasoning even when paths are missing or incomplete. By utilizing a query-based attention system, KnowFormer calculates attention scores between pairs of entities based on their connection plausibility, offering a more flexible and efficient way to infer missing facts.

The KnowFormer model incorporates both a query function and a value function to generate informative representations of entities. The query function helps the model identify relevant entity pairs by analyzing the knowledge graph’s structure, while the value function encodes the structural information needed for accurate reasoning. This dual-function mechanism allows KnowFormer to handle the complexity of large-scale knowledge graphs effectively. The researchers introduced an approximation method to improve the scalability of the model. KnowFormer can process knowledge graphs with millions of facts while maintaining a low time complexity, allowing it to efficiently handle large datasets like FB15k-237 and YAGO3-10.

In terms of performance, KnowFormer demonstrated its superiority across a range of benchmarks. On the FB15k-237 dataset, for example, the model achieved a Mean Reciprocal Rank (MRR) of 0.417, significantly outperforming other models like TransE (MRR: 0.333) and DistMult (MRR: 0.330). Similarly, on the WN18RR dataset, KnowFormer achieved an MRR of 0.752, outperforming baseline methods such as DRUM and SimKGC. The model’s performance was equally impressive on the YAGO3-10 dataset, where it recorded a Hits@10 score of 73.4%, surpassing the results of prominent models in the field. KnowFormer also showed exceptional performance in inductive reasoning tasks, where it achieved an MRR of 0.827 on the NELL-995 dataset, far exceeding the scores of existing methods.

In conclusion, KnowFormer, by moving away from purely path-based methods and embedding-based approaches, the researchers developed a model that leverages transformer architecture to improve reasoning capabilities. KnowFormer’s attention mechanism, combined with its scalable design, makes it highly effective at addressing the issues of missing paths and information compression. With superior performance across multiple datasets, including a 0.417 MRR on FB15k-237 and a 0.752 MRR on WN18RR, KnowFormer has established itself as a state-of-the-art model in knowledge graph reasoning. Its ability to handle both transductive and inductive reasoning tasks positions it as a robust tool for future artificial intelligence and machine learning applications.


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